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BIRDS
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BIRDS: Biodiversity Information Review and Decision Support. |
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bombusObs
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Species observations for the genus Bombus spp. in Götaland, Sweden. |
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bombusObsShort
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A short version of bombusObs dataset for faster examples. |
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bryophytaObs
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Species observations of bryophytes in Götaland, Sweden |
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communityMatrix()
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Create a community matrix (grid cells x species) |
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communityMatrixGrid()
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Creates a community matrix per grid cell (sample x species x grid cell) |
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createVisits()
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Create unique visits IDs |
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drawPolygon()
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Create the polygon for the study area by drawing into a world map |
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exploreVisits()
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A function to explore the definition of field visits |
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exportBirds()
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Export single variables from SummarisedBirds objects |
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exposeIgnorance()
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Create ignorance scores |
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focalSpReport()
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Summarise all records for a species |
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focalSpSummary()
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Summarize records of a species among all visits |
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getGridIDs()
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Create unique IDs based on a grid |
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getUTMproj()
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A wrapper around getUTMzone and produce a crs object string |
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gotaland
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Götaland, Sweden. |
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gridAsString()
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Convert a grid into a web query string. |
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gridGotaland
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Götalands grid, Sweden. |
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listSpecies()
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Lists all species names from the data set |
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makeCircle()
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Create the minimum circle containing the points |
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makeGrid()
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Make a grid |
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OB2Polygon()
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Create the polygon for the study area from a data set of class ‘OrganizedBirds’ |
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obsData()
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Extract observation data |
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obsIndex()
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Observation Index |
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organizeBirds() organiseBirds()
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Organize a data.frame to a usable format |
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overlayBirds()
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Overlay BIRDS object and grid |
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recBySpp()
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Observations by species or records-by-species matrix |
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removeObs()
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Remove observations belonging to the shortest ("worst") visits |
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SB
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A simple summarisedBirds object. |
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searchPolygon
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Searching polygon covering Götaland, Sweden. |
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simpleSB
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A simple empty summarisedBirds object. |
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simplifySpp()
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Simplify species names |
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spatialVisits()
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A function to convert visits into a spatial object |
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speciesSummary()
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Summarize all records for a species |
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summarizeBirds() summariseBirds()
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Summarize the OrganizedBirds |
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visits() `visits<-`()
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Get/set the visits |
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whichNonEmpty()
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Which cells are not empty |